Outbreak Tools


Hackathon for Outbreak Analysis in R

Implements basic tools for storing, handling and visualizing disease outbreak data, as well as simple analysis tools. OutbreakTools defines the new formal class obkData which can be used to store any case-base outbreak data, and provides summaries for these objects, alongside a range of functions for subsetting and data manipulation. It implements a range of graphics for visualising timelines, maps, contact networks and genetic analyses. It also includes a simple case-base outbreak simulation tool.


Informations générales
Partenaire externe
Centre for Outbreak Analysis and Modelling at Imperial College
Suivi
Maintenu
Informations spécifiques
Langage(s) de développement
R; C
N° de version courante
0.1-14
Date de la version courante
OS supporté
Type de licence


Porteur(s)
Unité
BioSP
Département co-porteur
SPE
Auteur(s)
Thibaud Jombart
Samuel Soubeyrand
The 2013 Hackout team
Contact
t.jombart@imperial.ac.uk


 

 

Système d'information scientifique MIA classé par unité (UR, UMR)

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